SingleCellTK

The Single Cell Toolkit (SCTK) in the singleCellTK package provides an interface to popular tools for importing, quality control, analysis, and visualization of single cell

Celda

“Celda” stands for “CEllular Latent Dirichlet Allocation”. It is a suite of Bayesian hierarchical models and supporting functions to perform bi-clustering of features and cells

DecontX

DecontX is a Bayesian hierarchical model to estimate and remove cross-contamination from ambient RNA in single-cell genomic data. DecontX will take the count matrix, estimate

Scruff

Scruff (Single Cell RNA-Seq UMI Filtering Facilitator) is a package for processing single cell RNA-seq (scRNA-seq) FASTQ reads generated by CEL-Seq and CEL-Seq2 protocols. It

Musicatk

Musicatk (Mutational Signature Comprehensive Analysis Toolkit) is a comprehensive toolkit for analysis of mutational signatures. It has utilities for extracting variants from a variety of

ExperimentSubset

ExperimentSubset is an R package to manage subsets of Bioconductor Experiment objects. ExperimentSubset package enables users to perform flexible subsetting of Single-Cell data that comes