Celda

“Celda” stands for “CEllular Latent Dirichlet Allocation”. It is a suite of Bayesian hierarchical models and supporting functions to perform bi-clustering of features and cells

DecontX

DecontX is a Bayesian hierarchical model to estimate and remove cross-contamination from ambient RNA in single-cell genomic data. DecontX will take the count matrix, estimate

Scruff

Scruff (Single Cell RNA-Seq UMI Filtering Facilitator) is a package for processing single cell RNA-seq (scRNA-seq) FASTQ reads generated by CEL-Seq and CEL-Seq2 protocols. It

Musicatk

Musicatk (Mutational Signature Comprehensive Analysis Toolkit) is a comprehensive toolkit for analysis of mutational signatures. It has utilities for extracting variants from a variety of

ExperimentSubset

ExperimentSubset is an R package to manage subsets of Bioconductor Experiment objects. ExperimentSubset package enables users to perform flexible subsetting of Single-Cell data that comes