R/scater_CPM.R
scaterCPM.Rd
scaterCPM Uses CPM from scater library to compute counts-per-million.
scaterCPM(inSCE, assayName = "ScaterCPMCounts", useAssay = "counts")
Input SingleCellExperiment object
New assay name for cpm data.
Input assay
inSCE Updated SingleCellExperiment object
data(sce_chcl, package = "scds")
sce_chcl <- scaterCPM(sce_chcl,"countsCPM", "counts")