A function to generate .html Rmarkdown report containing the visualizations of the runDropletQC function output
reportDropletQC(
inSCE,
output_file = NULL,
output_dir = NULL,
subTitle = NULL,
studyDesign = NULL
)
A SingleCellExperiment object containing the full droplet count matrix with the output from runDropletQC function
name of the generated file. If NULL/default then the output file name will be based on the name of the Rmarkdown template
name of the output directory to save the rendered file. If NULL/default the file is stored to the current working directory
subtitle of the QC HTML report. Default is NULL.
description of the data set and experiment design. It would be shown at the top of QC HTML report. Default is NULL.
.html file
data(scExample, package = "singleCellTK")
if (FALSE) {
sce <- runDropletQC(sce)
reportDropletQC(inSCE = sce)
}