A wrapper function which visualizes outputs from the runEmptyDrops function stored in the colData slot of the SingleCellExperiment object via plots.
plotBarcodeRankDropsResults(
inSCE,
sample = NULL,
defaultTheme = TRUE,
dotSize = 0.5,
titleSize = 18,
axisLabelSize = 18,
axisSize = 15,
legendSize = 15
)
Input SingleCellExperiment object with saved dimension reduction components or a variable with saved results from runBarcodeRankDrops. Required.
Character vector. Indicates which sample each cell belongs to. Default NULL.
Removes grid in plot and sets axis title size to 10 when TRUE. Default TRUE.
Size of dots. Default 0.5.
Size of title of plot. Default 18.
Size of x/y-axis labels. Default 18.
Size of x/y-axis ticks. Default 15.
size of legend. Default 15.
list of .ggplot objects
data(scExample, package="singleCellTK")
sce <- runBarcodeRankDrops(inSCE=sce)
#> Thu Mar 31 12:08:31 2022 ... Running 'barcodeRanks'
plotBarcodeRankDropsResults(inSCE=sce)
#> $scatterBarcodeRank
#> Warning: Transformation introduced infinite values in continuous y-axis
#>