enrichR Given a list of genes this function runs the enrichR() to perform Gene enrichment

enrichRSCE(inSCE, glist, db = NULL)

Arguments

inSCE: Input SingleCellExperiment object.
glist: selected genes for enrichment analysis using enrichR(). Required
db: selected database name from the enrichR database list. if NULL then enrichR will be run on all the available databases on the enrichR database.

Value

enrichRSCE(): returns a data.frame of enrichment terms overlapping in the respective databases along with p-values, z-scores etc.,

Examples

data("mouseBrainSubsetSCE")
enrichRSCE(mouseBrainSubsetSCE, "Cmtm5", "GO_Cellular_Component_2017")
#> Uploading data to Enrichr... Done.
#>   Querying GO_Cellular_Component_2017... Done.
#> Parsing results... Done.
#>            Database_selected                                        Term
#> 1 GO_Cellular_Component_2017 integral component of membrane (GO:0016021)
#>   Overlap   P.value Adjusted.P.value Old.P.value Old.Adjusted.P.value
#> 1   1/842 0.0420998        0.0420998           0                    0
#>   Odds.Ratio Combined.Score Genes                         link
#> 1      19158       60687.03 CMTM5 http://www.geneontology.org/