Creates a table that contains the list of features in each feature module.
featureModuleTable( sce, useAssay = "counts", altExpName = "featureSubset", displayName = NULL, outputFile = NULL )
sce | A SingleCellExperiment object returned by
celda_G, or celda_CG, with the matrix
located in the |
---|---|
useAssay | A string specifying which assay slot to use. Default "counts". |
altExpName | The name for the altExp slot to use. Default "featureSubset". |
displayName | Character. The column name of
|
outputFile | File name for feature module table. If NULL, file will not be created. Default NULL. |
Matrix. Contains a list of features per each column (feature module)
#> L1 L2 L3 L4 L5 L6 L7 #> [1,] "Gene_45" "Gene_77" "Gene_72" "Gene_87" "Gene_41" "Gene_80" "Gene_24" #> [2,] "Gene_5" "Gene_17" "Gene_15" "Gene_6" "Gene_70" "Gene_60" "Gene_53" #> [3,] "Gene_94" "Gene_30" "Gene_22" "Gene_82" "Gene_64" "Gene_55" "Gene_74" #> [4,] "Gene_91" "Gene_9" "Gene_52" "Gene_28" "Gene_36" "Gene_40" "Gene_59" #> [5,] "Gene_3" "" "Gene_78" "Gene_39" "Gene_37" "Gene_25" "Gene_89" #> [6,] "Gene_50" "" "Gene_84" "Gene_10" "Gene_14" "Gene_62" "Gene_11" #> [7,] "Gene_90" "" "Gene_81" "Gene_51" "Gene_99" "Gene_97" "Gene_49" #> [8,] "" "" "" "Gene_100" "Gene_20" "Gene_95" "Gene_1" #> [9,] "" "" "" "Gene_65" "Gene_2" "Gene_46" "Gene_79" #> [10,] "" "" "" "Gene_33" "Gene_44" "Gene_76" "" #> [11,] "" "" "" "Gene_38" "Gene_66" "" "" #> [12,] "" "" "" "" "Gene_32" "" "" #> [13,] "" "" "" "" "Gene_34" "" "" #> [14,] "" "" "" "" "Gene_23" "" "" #> [15,] "" "" "" "" "" "" "" #> [16,] "" "" "" "" "" "" "" #> L8 L9 L10 #> [1,] "Gene_4" "Gene_85" "Gene_69" #> [2,] "Gene_43" "Gene_98" "Gene_47" #> [3,] "Gene_42" "Gene_35" "Gene_13" #> [4,] "Gene_29" "Gene_8" "Gene_92" #> [5,] "Gene_73" "Gene_83" "Gene_88" #> [6,] "Gene_61" "Gene_19" "Gene_93" #> [7,] "" "Gene_63" "Gene_12" #> [8,] "" "Gene_75" "Gene_86" #> [9,] "" "Gene_21" "Gene_58" #> [10,] "" "Gene_48" "Gene_18" #> [11,] "" "Gene_31" "Gene_7" #> [12,] "" "Gene_57" "Gene_16" #> [13,] "" "Gene_27" "" #> [14,] "" "Gene_67" "" #> [15,] "" "Gene_68" "" #> [16,] "" "Gene_54" ""