SingleCellExperiment or celdaList objectR/accessors.R
runParams.RdReturns details on the clustering parameters and model priors from the celdaList object when it was created.
runParams(x, altExpName = "featureSubset")
# S4 method for SingleCellExperiment
runParams(x, altExpName = "featureSubset")
# S4 method for celdaList
runParams(x)An object of class SingleCellExperiment or class
celdaList.
The name for the altExp slot to use. Default "featureSubset".
Data Frame. Contains details on the various K/L parameters, chain parameters, seed, and final log-likelihoods derived for each model in the provided celdaList.
data(sceCeldaCGGridSearch)
runParams(sceCeldaCGGridSearch)
#> index chain K L seed logLikelihood mean_perplexity
#> 1 1 1 4 9 12345 -1226407 46.95862
#> 2 2 1 5 9 12345 -1214714 45.25311
#> 3 3 1 6 9 12345 -1214754 45.25124
#> 4 4 1 4 10 12345 -1225233 46.77100
#> 5 5 1 5 10 12345 -1212891 44.98559
#> 6 6 1 6 10 12345 -1212928 44.98491
#> 7 7 1 4 11 12345 -1225255 46.77053
#> 8 8 1 5 11 12345 -1212917 44.98514
#> 9 9 1 6 11 12345 -1212953 44.98495
data(celdaCGGridSearchRes)
runParams(celdaCGGridSearchRes)
#> index chain K L logLikelihood mean_perplexity
#> 1 1 1 4 9 -1228381 47.12902
#> 2 2 1 5 9 -1217364 45.51741
#> 3 3 1 6 9 -1217407 45.51451
#> 4 4 1 4 10 -1227891 47.04897
#> 5 5 1 5 10 -1215541 45.24781
#> 6 6 1 6 10 -1215583 45.24439
#> 7 7 1 4 11 -1227913 47.04849
#> 8 8 1 5 11 -1215567 45.24733
#> 9 9 1 6 11 -1215619 45.24380