Changelog

Source: NEWS.md

celda v1.18.1 (2023-11-05)

  • Update to match Bioconductor release version
  • Removed multipanelfigure as a dependency

celda v1.14.2 (2023-01-19)

  • Update to match Bioconductor release version

celda v1.13.0 (2022-10-20)

  • Bug fixes related to cluster labels stored as factors and plotting
  • Updated sparse matrix conversion to work with Matrix v1.4-2

celda v1.12.0 (2022-04-30)

  • Update to match Bioconductor 3.15 release version

celda v1.11.1 (2022-03-31)

  • Fixes to reports
  • Use smoothe splines for perplexity and RPC plots

celda v1.11.0 (2022-03-31)

  • Improvments to decontX vignette
  • Added ability to subsample to speed up perplexity calculations
  • Added ability to use batch parameter with the raw matrix in decontX

celda v1.10.0 (2021-12-28)

  • Update to match Bioconductor release version

celda v1.9.3 (2021-10-04)

  • Fixed bug in checking background matrix with decontX
  • Switched to using Github Actions for Continuous Integration
  • Fixed plotting bugs in celda results reports
  • Speed up final step in decontX when creating final decontaminated matrix

celda v1.9.2 (2021-07-19)

  • Added a NEWS.md file to track changes to the package.
  • Added new tutorials and documentation generated with pkgdown.
  • Removed warnings in plotRPC functions.
  • Added use of “displayName” to several functions that show feature names.
  • Minor bug fix when the input matrix was sparse and contained non-integer values.
  • Several improvements to plotting functions.

celda v1.7.7 (2021-04-12):

  • Added handling for sparse matrices

celda v1.7.6 (2021-04-04):

  • Added functions for creating HTML reports
  • Fixed bug in decontX plotting

celda v1.7.4 (2021-03-09):

  • Enable input of raw/droplet matrix into decontX to estimate ambient RNA

celda v1.1.6 (2019-07-16):

  • Add multiclass decision tree

celda v1.1.4 (2019-05-28):

  • Add Alternate headings support for plotDimReduceFeature

celda v1.1.3 (2019-05-14):

  • Add multiclass decision tree (MCDT) cell cluster annotation

celda v1.1.2 (2019-05-14):

  • Fix a bug in celdaHeatmap

celda v1.0.1 (2019-05-09):

  • Default seed setting to maintain reproducibility

celda v0.99.34 (2019-04-23):

  • Minor changes to the vignettes

celda v0.99.23 (2019-04-10):

  • Remove pheatmap import

celda v0.99.22 (2019-04-09):

  • Package celda, for bi-clustering of single-cell ’omics data.

celda v0.99.8 (2019-03-11):

  • Second submission to Bioconductor

celda v0.99.0 (2018-05-15):

  • First submission to Bioconductor