Creates a table that contains the list of features in each feature module.
featureModuleTable(
sce,
useAssay = "counts",
altExpName = "featureSubset",
displayName = NULL,
outputFile = NULL
)A SingleCellExperiment object returned by
celda_G, or celda_CG, with the matrix
located in the useAssay assay slot.
Rows represent features and columns represent cells.
A string specifying which assay slot to use. Default "counts".
The name for the altExp slot to use. Default "featureSubset".
Character. The column name of
rowData(sce) that specifies the display names for
the features. Default NULL, which displays the row names.
File name for feature module table. If NULL, file will not be created. Default NULL.
Matrix. Contains a list of features per each column (feature module)
data(sceCeldaCG)
featureModuleTable(sceCeldaCG)
#> L1 L2 L3 L4 L5 L6 L7
#> [1,] "Gene_45" "Gene_77" "Gene_72" "Gene_87" "Gene_41" "Gene_80" "Gene_24"
#> [2,] "Gene_5" "Gene_17" "Gene_15" "Gene_6" "Gene_70" "Gene_60" "Gene_53"
#> [3,] "Gene_94" "Gene_30" "Gene_22" "Gene_82" "Gene_64" "Gene_55" "Gene_74"
#> [4,] "Gene_91" "Gene_9" "Gene_52" "Gene_28" "Gene_36" "Gene_40" "Gene_59"
#> [5,] "Gene_3" "" "Gene_78" "Gene_39" "Gene_37" "Gene_25" "Gene_89"
#> [6,] "Gene_50" "" "Gene_84" "Gene_10" "Gene_14" "Gene_62" "Gene_11"
#> [7,] "Gene_90" "" "Gene_81" "Gene_51" "Gene_99" "Gene_97" "Gene_49"
#> [8,] "" "" "" "Gene_100" "Gene_20" "Gene_95" "Gene_1"
#> [9,] "" "" "" "Gene_65" "Gene_2" "Gene_46" "Gene_79"
#> [10,] "" "" "" "Gene_33" "Gene_44" "Gene_76" ""
#> [11,] "" "" "" "Gene_38" "Gene_66" "" ""
#> [12,] "" "" "" "" "Gene_32" "" ""
#> [13,] "" "" "" "" "Gene_34" "" ""
#> [14,] "" "" "" "" "Gene_23" "" ""
#> [15,] "" "" "" "" "" "" ""
#> [16,] "" "" "" "" "" "" ""
#> L8 L9 L10
#> [1,] "Gene_4" "Gene_85" "Gene_69"
#> [2,] "Gene_43" "Gene_98" "Gene_47"
#> [3,] "Gene_42" "Gene_35" "Gene_13"
#> [4,] "Gene_29" "Gene_8" "Gene_92"
#> [5,] "Gene_73" "Gene_83" "Gene_88"
#> [6,] "Gene_61" "Gene_19" "Gene_93"
#> [7,] "" "Gene_63" "Gene_12"
#> [8,] "" "Gene_75" "Gene_86"
#> [9,] "" "Gene_21" "Gene_58"
#> [10,] "" "Gene_48" "Gene_18"
#> [11,] "" "Gene_31" "Gene_7"
#> [12,] "" "Gene_57" "Gene_16"
#> [13,] "" "Gene_27" ""
#> [14,] "" "Gene_67" ""
#> [15,] "" "Gene_68" ""
#> [16,] "" "Gene_54" ""