Get or set decontaminated counts matrix

Gets or sets the decontaminated counts matrix from a a SingleCellExperiment object.

decontXcounts(object, ...)

decontXcounts(object, ...) <- value

# S4 method for SingleCellExperiment
decontXcounts(object, ...)

# S4 method for SingleCellExperiment
decontXcounts(object, ...) <- value

Arguments

object

A SingleCellExperiment object.

...

For the generic, further arguments to pass to each method.

value

A matrix to save as an assay called decontXcounts

Value

If getting, the assay from object with the name decontXcounts will be returned. If setting, a SingleCellExperiment object will be returned with decontXcounts listed in the assay slot.

See also

assay and assay<-