Get the log-likelihood

Retrieves the final log-likelihood from all iterations of Gibbs sampling used to generate a celdaModel.

bestLogLikelihood(x, altExpName = "featureSubset")

# S4 method for SingleCellExperiment
bestLogLikelihood(x, altExpName = "featureSubset")

# S4 method for celdaModel
bestLogLikelihood(x)

Arguments

x

A SingleCellExperiment object returned by celda_C, celda_G, or celda_CG, or a celda model object.

altExpName

The name for the altExp slot to use. Default "featureSubset".

Value

Numeric. The log-likelihood at the final step of Gibbs sampling used to generate the model.

Examples

data(sceCeldaCG)
bestLogLikelihood(sceCeldaCG)
#> [1] -1212891
data(celdaCGMod)
bestLogLikelihood(celdaCGMod)
#> [1] -1215541