Plots for runBarcodeRankDrops outputs. — plotBarcodeRankDropsResults • singleCellTK

A wrapper function which visualizes outputs from the runBarcodeRankDrops function stored in the metadata slot of the SingleCellExperiment object.

plotBarcodeRankDropsResults(
  inSCE,
  sample = NULL,
  defaultTheme = TRUE,
  dotSize = 0.5,
  titleSize = 18,
  axisSize = 15,
  axisLabelSize = 18,
  legendSize = 15
)

Arguments

inSCE: Input SingleCellExperiment object with saved dimension reduction components or a variable with saved results from runBarcodeRankDrops. Required.
sample: Character vector or colData variable name. Indicates which sample each cell belongs to. Default NULL.
defaultTheme: Removes grid in plot and sets axis title size to 10 when TRUE. Default TRUE.
dotSize: Size of dots. Default 0.5.
titleSize: Size of title of plot. Default 18.
axisSize: Size of x/y-axis ticks. Default 15.
axisLabelSize: Size of x/y-axis labels. Default 18.
legendSize: size of legend. Default 15.

Value

list of .ggplot objects

Examples

data(scExample, package = "singleCellTK")
sce <- runBarcodeRankDrops(inSCE = sce)
#> Sat Mar 18 10:28:19 2023 ... Running 'barcodeRanks'
plotBarcodeRankDropsResults(inSCE = sce)
#> $scatterBarcodeRank
#> Warning: Transformation introduced infinite values in continuous y-axis

#>