S4 method for getting and setting SoupX results that cannot be
appended to either rowData(inSCE)
or colData(inSCE)
.
S4 method for getting and setting SoupX results that cannot be
appended to either rowData(inSCE)
or colData(inSCE)
.
getSoupX(inSCE, sampleID, background = FALSE) <- value
getSoupX(inSCE, sampleID = NULL, background = FALSE)
# S4 method for SingleCellExperiment
getSoupX(inSCE, sampleID = NULL, background = FALSE)
# S4 method for SingleCellExperiment
getSoupX(inSCE, sampleID, background = FALSE) <- value
A SingleCellExperiment object. For getter method,
runSoupX
must have been already applied.
Character vector. For getter method, the samples that should
be included in the returned list. Leave this NULL
for all samples.
Default NULL
. For setter method, only one sample allowed.
Logical. Whether background
was applied when
running runSoupX
. Default FALSE
.
Dedicated list object of SoupX results.
For getter method, a list with SoupX results for specified samples.
For setter method, inSCE
with SoupX results updated.
For getter method, a list with SoupX results for specified samples.
For setter method, inSCE
with SoupX results updated.
runSoupX, plotSoupXResults
if (FALSE) {
sce <- importExampleData("pbmc3k")
sce <- runSoupX(sce, sample = "sample")
soupXResults <- getSoupX(sce)
}