Export data in Seurat object
exportSCEToSeurat(
inSCE,
prefix = "sample",
outputDir = "./",
overwrite = TRUE,
copyColData = TRUE,
copyReducedDim = TRUE,
copyDecontX = TRUE
)
A SingleCellExperiment object that contains the data. QC metrics are stored in colData of the singleCellExperiment object.
Prefix to use for the name of the output file. Default "sample"
.
Path to the directory where outputs will be written. Default is the current working directory.
Boolean. Whether overwrite the output if it already exists in the outputDir. Default TRUE
.
Boolean. Whether copy 'colData' of SCE object to the 'meta.data' of Seurat object. Default TRUE
.
Boolean. Whether copy 'reducedDims' of the SCE object to the 'reductions' of Seurat object. Default TRUE
.
Boolean. Whether copy 'decontXcounts' assay of the SCE object to the 'assays' of Seurat object. Default TRUE
.
Generates a Seurat object containing data from inSCE
.