expData Get data item from an input SingleCellExperiment object. The data item can be an assay, altExp (subset) or a reducedDim, which is retrieved based on the name of the data item.

Source: R/sctkTagging.R

expData Get data item from an input SingleCellExperiment object. The data item can be an assay, altExp (subset) or a reducedDim, which is retrieved based on the name of the data item.

# S4 method for ANY,character
expData(inSCE, assayName)

Arguments

inSCE

Input SingleCellExperiment object.

assayName

Specify the name of the data item to retrieve.

Value

Specified data item.

Examples

data(scExample, package = "singleCellTK")
mat <- expData(sce, "counts")