Visit Campbell Lab
The Single Cell ToolKit (SCTK) is an analysis platform that provides an R interface to
several popular scRNA-seq preprocessing, quality control, and visualization tools.
SCTK imports raw or filtered counts from various single cell sequencing technologies and upstream tools such as 10x CellRanger, BUStools, Optimus, STARSolo, and more.
Traditional analysis of single-cell RNA-seq data can be performed in the R console using wrapper functions for a multitude of tools and algorithms.
The Shiny app allows users without programming experience to easily analyze their single cell RNA-seq data with a Graphics User Interface (GUI).
Comprehensive HTML reports developed with Rmarkdown allows users to document, explore, and share their analyses.
Tools from both R and Python can be seamlessly integrated within the same analysis workflow.
A complete toolkit on your finger tips.
Our Cloud App