Retrieve sample names from a musica or musica_result object

Source: R/methods.R

Sample names were included in the sample column in the variant object passed to create_musica. This returns a unique list of samples names in the order they are inside the musica object.

sample_names(object)

# S4 method for musica
sample_names(object)

# S4 method for musica_result
sample_names(object)

Arguments

object

A musica object generated by the create_musica function or a musica_result object generated by a mutational discovery or prediction tool.

Value

A character vector of sample names

Examples

data(res)
sample_names(res)

#> [1] TCGA-56-7582-01A-11D-2042-08 TCGA-77-7335-01A-11D-2042-08
#> [3] TCGA-94-7557-01A-11D-2122-08 TCGA-97-7938-01A-11D-2167-08
#> [5] TCGA-EE-A3J5-06A-11D-A20D-08 TCGA-ER-A197-06A-32D-A197-08
#> [7] TCGA-ER-A19O-06A-11D-A197-08
#> 7 Levels: TCGA-56-7582-01A-11D-2042-08 ... TCGA-ER-A19O-06A-11D-A197-08