R/compare_results.R
compare_cosmic_v3.Rd
Compare a result object to COSMIC V3 Signatures; Select exome or genome for SBS and only genome for DBS or Indel classes
compare_cosmic_v3( result, variant_class, sample_type, metric = "cosine", threshold = 0.9, result_name = deparse(substitute(result)) )
result | A |
---|---|
variant_class | Compare to SBS, DBS, or Indel |
sample_type | exome (SBS only) or genome |
metric | One of |
threshold | threshold for similarity |
result_name | title for plot user result signatures |
Returns the comparisons
#> cosine x_sig_index y_sig_index x_sig_name y_sig_name #> 2 0.9028629 3 8 Signature3 SBS7b #> 1 0.8877524 3 7 Signature3 SBS7a