R/annotate_variants.R
add_flank_to_variants.Rd
Uses a genome object to find context and add it to the variant table
add_flank_to_variants( musica, g, flank_start, flank_end, build_table = TRUE, overwrite = FALSE )
musica | Input samples |
---|---|
g | A BSgenome object indicating which genome reference the variants and their coordinates were derived from. |
flank_start | Start of flank area to add, can be positive or negative |
flank_end | End of flank area to add, can be positive or negative |
build_table | Automatically build a table using the annotation and add |
overwrite | Overwrite existing count table |
None it to the musica
data(musica_sbs96_tiny) g <- select_genome("19") add_flank_to_variants(musica_sbs96_tiny, g, 1, 2) add_flank_to_variants(musica_sbs96_tiny, g, -2, -1)