sceCeldaG

A SingleCellExperiment object containing the results of running selectFeatures and celda_G on celdaGSim.

sceCeldaG

Format

A SingleCellExperiment object

Examples

data(celdaGSim)
sceCeldaG <- selectFeatures(celdaGSim$counts)
sceCeldaG <- celda_G(sceCeldaG, L = celdaGSim$L, nchains = 1)
#> --------------------------------------------------
#> Starting Celda_G: Clustering genes.
#> --------------------------------------------------
#> Mon Jul 19 11:01:48 2021 .. Initializing 'y' in chain 1 with 'split' 
#> Mon Jul 19 11:01:48 2021 .... Completed iteration: 1 | logLik: -289209.476865707
#> Mon Jul 19 11:01:48 2021 .... Completed iteration: 2 | logLik: -289209.476865707
#> Mon Jul 19 11:01:48 2021 .... Completed iteration: 3 | logLik: -289209.476865707
#> Mon Jul 19 11:01:48 2021 .... Completed iteration: 4 | logLik: -289209.476865707
#> Mon Jul 19 11:01:48 2021 .... Completed iteration: 5 | logLik: -289209.476865707
#> Mon Jul 19 11:01:48 2021 .... Completed iteration: 6 | logLik: -289209.476865707
#> Mon Jul 19 11:01:48 2021 .... Completed iteration: 7 | logLik: -289209.476865707
#> Mon Jul 19 11:01:48 2021 .... Completed iteration: 8 | logLik: -289209.476865707
#> Mon Jul 19 11:01:48 2021 .... Completed iteration: 9 | logLik: -289209.476865707
#> Mon Jul 19 11:01:48 2021 .... Determining if any gene clusters should be split.
#> Mon Jul 19 11:01:49 2021 .... No additional splitting was performed.
#> Mon Jul 19 11:01:49 2021 .... Completed iteration: 10 | logLik: -289209.476865707
#> Mon Jul 19 11:01:49 2021 .... Completed iteration: 11 | logLik: -289209.476865707
#> Mon Jul 19 11:01:49 2021 .. Finished chain 1
#> --------------------------------------------------
#> Completed Celda_G. Total time: 0.294132 secs
#> --------------------------------------------------