R/accessors.R
celdaModules.Rd
celdaModules(sce, altExpName = "featureSubset") # S4 method for SingleCellExperiment celdaModules(sce, altExpName = "featureSubset") celdaModules(sce, altExpName = "featureSubset") <- value # S4 method for SingleCellExperiment celdaModules(sce, altExpName = "featureSubset") <- value
sce | A SingleCellExperiment object returned by
celda_G, or celda_CG, with the matrix
located in the |
---|---|
altExpName | The name for the altExp slot to use. Default "featureSubset". |
value | Character vector of feature module labels for replacements.
Works only if |
Character vector. Contains feature module labels for each feature in x.
#> [1] 7 5 1 8 1 4 10 9 2 4 7 10 10 5 3 10 2 10 9 5 9 3 5 7 6 #> [26] 9 4 8 2 9 5 4 5 9 5 5 4 4 6 5 8 8 5 1 6 10 9 7 1 4 #> [51] 3 7 9 6 9 10 7 6 8 6 9 5 4 5 9 9 10 5 3 8 7 9 6 2 3 #> [76] 7 6 3 4 9 3 9 10 4 10 7 1 1 10 10 1 6 6 9 5 4 #> Levels: 1 2 3 4 5 6 7 8 9 10