sceCeldaCG

A SingleCellExperiment object containing the results of running selectFeatures and celda_CG on celdaCGSim.

sceCeldaCG

Format

A SingleCellExperiment object

Examples

data(celdaCGSim)
sceCeldaCG <- selectFeatures(celdaCGSim$counts)
sceCeldaCG <- celda_CG(sceCeldaCG,
    K = celdaCGSim$K,
    L = celdaCGSim$L,
    sampleLabel = celdaCGSim$sampleLabel,
    nchains = 1)
#> --------------------------------------------------
#> Starting Celda_CG: Clustering cells and genes.
#> --------------------------------------------------
#> Sat Apr 30 15:15:31 2022 .. Initializing 'z' in chain 1 with 'split' 
#> Sat Apr 30 15:15:31 2022 .. Initializing 'y' in chain 1 with 'split' 
#> Sat Apr 30 15:15:33 2022 .... Completed iteration: 1 | logLik: -1212891.16546068
#> Sat Apr 30 15:15:33 2022 .... Completed iteration: 2 | logLik: -1212891.16546068
#> Sat Apr 30 15:15:33 2022 .... Completed iteration: 3 | logLik: -1212891.16546068
#> Sat Apr 30 15:15:33 2022 .... Completed iteration: 4 | logLik: -1212891.16546068
#> Sat Apr 30 15:15:33 2022 .... Completed iteration: 5 | logLik: -1212891.16546068
#> Sat Apr 30 15:15:33 2022 .... Completed iteration: 6 | logLik: -1212891.16546068
#> Sat Apr 30 15:15:33 2022 .... Completed iteration: 7 | logLik: -1212891.16546068
#> Sat Apr 30 15:15:33 2022 .... Completed iteration: 8 | logLik: -1212891.16546068
#> Sat Apr 30 15:15:33 2022 .... Completed iteration: 9 | logLik: -1212891.16546068
#> Sat Apr 30 15:15:33 2022 .... Determining if any gene clusters should be split.
#> Sat Apr 30 15:15:33 2022 .... No additional splitting was performed.
#> Sat Apr 30 15:15:33 2022 .... Determining if any cell clusters should be split.
#> Sat Apr 30 15:15:33 2022 .... No additional splitting was performed.
#> Sat Apr 30 15:15:33 2022 .... Completed iteration: 10 | logLik: -1212891.16546068
#> Sat Apr 30 15:15:33 2022 .... Determining if any cell clusters should be split.
#> Sat Apr 30 15:15:33 2022 .... No additional splitting was performed.
#> Sat Apr 30 15:15:33 2022 .... Completed iteration: 11 | logLik: -1212891.16546068
#> Sat Apr 30 15:15:33 2022 .. Finished chain 1
#> --------------------------------------------------
#> Completed Celda_CG. Total time: 2.366771 secs
#> --------------------------------------------------