R/clusterProbability.R
clusterProbability.Rd
Calculate the conditional probability of each cell belonging to each subpopulation given all other cell cluster assignments and/or each feature belonging to each module given all other feature cluster assignments in a celda model.
clusterProbability( sce, useAssay = "counts", altExpName = "featureSubset", log = FALSE ) # S4 method for SingleCellExperiment clusterProbability( sce, useAssay = "counts", altExpName = "featureSubset", log = FALSE )
sce | A SingleCellExperiment object returned by
celda_C, celda_G, or celda_CG, with the matrix
located in the |
---|---|
useAssay | A string specifying which assay slot to use. Default "counts". |
altExpName | The name for the altExp slot to use. Default "featureSubset". |
log | Logical. If |
A list containging a matrix for the conditional cell subpopulation cluster and/or feature module probabilities.
`celda_C()` for clustering cells